read_group_to_string
Validates a
ReadGroup struct is well-formed and then converts it to a StringWDL Version
1.1
Category
Utility
Nested Inputs Not Allowed
RUN WITH
sprocket run data_structures/read_group.wdldata_structures\read_group.wdl [INPUTS]...
Inputs
Required Inputs
Name
Type
Description
read_groupReadGroupInput
ReadGroup structInput
ReadGroup structOther Inputs
Name
Type
Default
Description
required_fieldsArray[String][]Array of read group fields that must be defined. The ID field is always required and does not need to be specified.
Array of read group fields that must be defined. The ID field is always required and does not need to be specified.
format_as_sam_recordBooleanfalseFormat the `ReadGroup` as a SAM record? If `true`, the read group string will be...
Format the
ReadGroup as a SAM record? If true, the read group string will be prefixed with @RG and tab delimiters will be used instead of space delimiters.restrictiveBooleantrueIf true, run a stricter validation of field values. Otherwise, check against SAM spec-defined values.
If true, run a stricter validation of field values. Otherwise, check against SAM spec-defined values.
Outputs
Name
Type
Expression
Description
validated_read_groupStringinner_read_group_to_string.stringified_read_groupThe validated input
ReadGroup as a StringThe validated input
ReadGroup as a String